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    <h1 class="bar">All Classes</h1>
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        <li><a href="org/biogroovy/search/eutils/AbsEntrezSearchEngine.html" title="class in org.biogroovy.search.eutils" target="classFrame">AbsEntrezSearchEngine</a></li>
<li><a href="org/biogroovy/io/AbsFetcher.html" title="class in org.biogroovy.io" target="classFrame">AbsFetcher</a></li>
<li><a href="org/biogroovy/io/AbsJsonReader.html" title="class in org.biogroovy.io" target="classFrame">AbsJsonReader</a></li>
<li><a href="org/biogroovy/io/AbsJsonSeqFetcher.html" title="class in org.biogroovy.io" target="classFrame">AbsJsonSeqFetcher</a></li>
<li><a href="org/biogroovy/io/AbsReader.html" title="class in org.biogroovy.io" target="classFrame">AbsReader</a></li>
<li><a href="org/biogroovy/search/validators/AbsSearchParamValidator.html" title="class in org.biogroovy.search.validators" target="classFrame">AbsSearchParamValidator</a></li>
<li><a href="org/biogroovy/models/decorators/AbsSeqDecorator.html" title="class in org.biogroovy.models.decorators" target="classFrame">AbsSeqDecorator</a></li>
<li><a href="org/biogroovy/io/AbsSeqReader.html" title="class in org.biogroovy.io" target="classFrame">AbsSeqReader</a></li>
<li><a href="org/biogroovy/io/AbsSeqWriter.html" title="class in org.biogroovy.io" target="classFrame">AbsSeqWriter</a></li>
<li><a href="org/biogroovy/models/AbsSequence.html" title="class in org.biogroovy.models" target="classFrame">AbsSequence</a></li>
<li><a href="org/biogroovy/models/AbsSequenceFeature.html" title="class in org.biogroovy.models" target="classFrame">AbsSequenceFeature</a></li>
<li><a href="org/biogroovy/io/AbsTransformer.html" title="class in org.biogroovy.io" target="classFrame">AbsTransformer</a></li>
<li><a href="org/biogroovy/io/AbsWriter.html" title="class in org.biogroovy.io" target="classFrame">AbsWriter</a></li>
<li><a href="org/biogroovy/io/AbsXmlReader.html" title="class in org.biogroovy.io" target="classFrame">AbsXmlReader</a></li>
<li><a href="org/biogroovy/io/AbsXmlSlurper.html" title="class in org.biogroovy.io" target="classFrame">AbsXmlSlurper</a></li>
<li><a href="org/biogroovy/search/AbstractSearchEngine.html" title="class in org.biogroovy.search" target="classFrame">AbstractSearchEngine</a></li>
<li><a href="org/biogroovy/search/AbstractSnowflakeSearchEngine.html" title="class in org.biogroovy.search" target="classFrame">AbstractSnowflakeSearchEngine</a></li>
<li><a href="org/biogroovy/util/AccessionType.html" title="class in org.biogroovy.util" target="classFrame">AccessionType</a></li>
<li><a href="org/biogroovy/util/AccessionUtil.html" title="class in org.biogroovy.util" target="classFrame">AccessionUtil</a></li>
<li><a href="org/biogroovy/models/Article.html" title="class in org.biogroovy.models" target="classFrame">Article</a></li>
<li><a href="org/biogroovy/io/local/ArticleReader.html" title="class in org.biogroovy.io.local" target="classFrame">ArticleReader</a></li>
<li><a href="org/biogroovy/io/local/ArticleWriter.html" title="class in org.biogroovy.io.local" target="classFrame">ArticleWriter</a></li>
<li><a href="org/biogroovy/models/Author.html" title="class in org.biogroovy.models" target="classFrame">Author</a></li>
<li><a href="org/biogroovy/conf/BioGroovyConfig.html" title="class in org.biogroovy.conf" target="classFrame">BioGroovyConfig</a></li>
<li><a href="org/biogroovy/conf/BioGroovyConfigException.html" title="class in org.biogroovy.conf" target="classFrame">BioGroovyConfigException</a></li>
<li><a href="org/biogroovy/cabio/CaBioURLFactory.html" title="class in org.biogroovy.cabio" target="classFrame">CaBioURLFactory</a></li>
<li><a href="org/biogroovy/io/ebi/ChemblSlurper.html" title="class in org.biogroovy.io.ebi" target="classFrame">ChemblSlurper</a></li>
<li><a href="org/biogroovy/models/ClinicalTrial.html" title="class in org.biogroovy.models" target="classFrame">ClinicalTrial</a></li>
<li><a href="org/biogroovy/models/ClinicalTrialEligibility.html" title="class in org.biogroovy.models" target="classFrame">ClinicalTrialEligibility</a></li>
<li><a href="org/biogroovy/models/ClinicalTrialEligibility.Gender.html" title="enum in org.biogroovy.models.ClinicalTrialEligibility" target="classFrame">ClinicalTrialEligibility.Gender</a></li>
<li><a href="org/biogroovy/models/ClinicalTrialIntervention.html" title="class in org.biogroovy.models" target="classFrame">ClinicalTrialIntervention</a></li>
<li><a href="org/biogroovy/models/ClinicalTrialInterventionType.html" title="enum in org.biogroovy.models" target="classFrame">ClinicalTrialInterventionType</a></li>
<li><a href="org/biogroovy/models/ClinicalTrialOutcome.html" title="class in org.biogroovy.models" target="classFrame">ClinicalTrialOutcome</a></li>
<li><a href="org/biogroovy/io/clinicaltrials/ClinicalTrialReader.html" title="class in org.biogroovy.io.clinicaltrials" target="classFrame">ClinicalTrialReader</a></li>
<li><a href="org/biogroovy/models/ClinicalTrialSponsor.html" title="class in org.biogroovy.models" target="classFrame">ClinicalTrialSponsor</a></li>
<li><a href="org/biogroovy/models/ClinicalTrialSponsor.SponsorType.html" title="enum in org.biogroovy.models.ClinicalTrialSponsor" target="classFrame">ClinicalTrialSponsor.SponsorType</a></li>
<li><a href="org/biogroovy/search/clinicaltrials/ClinicalTrialsSearchEngine.html" title="class in org.biogroovy.search.clinicaltrials" target="classFrame">ClinicalTrialsSearchEngine</a></li>
<li><a href="org/biogroovy/search/clinicaltrials/ClinicalTrialsSearchEngine.ClinicalTrialResultBuilder.html" title="class in org.biogroovy.search.clinicaltrials.ClinicalTrialsSearchEngine" target="classFrame">ClinicalTrialsSearchEngine.ClinicalTrialResultBuilder</a></li>
<li><a href="org/biogroovy/models/decorators/DecorationException.html" title="class in org.biogroovy.models.decorators" target="classFrame">DecorationException</a></li>
<li><a href="org/biogroovy/models/Drug.html" title="class in org.biogroovy.models" target="classFrame">Drug</a></li>
<li><a href="org/biogroovy/eutils/EUtilsURLFactory.html" title="class in org.biogroovy.eutils" target="classFrame">EUtilsURLFactory</a></li>
<li><a href="org/biogroovy/models/decorators/EntrezGeneDecorator.html" title="class in org.biogroovy.models.decorators" target="classFrame">EntrezGeneDecorator</a></li>
<li><a href="org/biogroovy/models/decorators/EntrezGeneDecorator.DecoratorTask.html" title="class in org.biogroovy.models.decorators.EntrezGeneDecorator" target="classFrame">EntrezGeneDecorator.DecoratorTask</a></li>
<li><a href="org/biogroovy/io/eutils/EntrezGeneReader.html" title="class in org.biogroovy.io.eutils" target="classFrame">EntrezGeneReader</a></li>
<li><a href="org/biogroovy/search/eutils/EntrezGeneSearchEngine.html" title="class in org.biogroovy.search.eutils" target="classFrame">EntrezGeneSearchEngine</a></li>
<li><a href="org/biogroovy/search/eutils/EntrezGeneSearchEngine.EntrezGeneResultBuilder.html" title="class in org.biogroovy.search.eutils.EntrezGeneSearchEngine" target="classFrame">EntrezGeneSearchEngine.EntrezGeneResultBuilder</a></li>
<li><a href="org/biogroovy/io/eutils/EntrezGeneSlurper.html" title="class in org.biogroovy.io.eutils" target="classFrame">EntrezGeneSlurper</a></li>
<li><a href="org/biogroovy/eutils/EntrezGeneTransforms.html" title="class in org.biogroovy.eutils" target="classFrame">EntrezGeneTransforms</a></li>
<li><a href="org/biogroovy/search/eutils/EntrezParamMapBuilder.html" title="class in org.biogroovy.search.eutils" target="classFrame">EntrezParamMapBuilder</a></li>
<li><a href="org/biogroovy/io/FASTAReader.html" title="class in org.biogroovy.io" target="classFrame">FASTAReader</a></li>
<li><a href="org/biogroovy/models/FeatureType.html" title="enum in org.biogroovy.models" target="classFrame">FeatureType</a></li>
<li><a href="org/biogroovy/util/FileUtil.html" title="class in org.biogroovy.util" target="classFrame">FileUtil</a></li>
<li><a href="org/biogroovy/util/FrequencyMap.html" title="class in org.biogroovy.util" target="classFrame">FrequencyMap</a></li>
<li><a href="org/biogroovy/io/eutils/GBSeqProteinReader.html" title="class in org.biogroovy.io.eutils" target="classFrame">GBSeqProteinReader</a></li>
<li><a href="org/biogroovy/io/eutils/GBSeqTranscriptReader.html" title="class in org.biogroovy.io.eutils" target="classFrame">GBSeqTranscriptReader</a></li>
<li><a href="org/biogroovy/models/Gene.html" title="class in org.biogroovy.models" target="classFrame">Gene</a></li>
<li><a href="org/biogroovy/io/local/Gene2CSVWriter.html" title="class in org.biogroovy.io.local" target="classFrame">Gene2CSVWriter</a></li>
<li><a href="org/biogroovy/models/GeneOntology.html" title="class in org.biogroovy.models" target="classFrame">GeneOntology</a></li>
<li><a href="org/biogroovy/models/GeneOntologyEvidence.html" title="enum in org.biogroovy.models" target="classFrame">GeneOntologyEvidence</a></li>
<li><a href="org/biogroovy/models/GeneOntologyQualifier.html" title="enum in org.biogroovy.models" target="classFrame">GeneOntologyQualifier</a></li>
<li><a href="org/biogroovy/models/GeneOntologyType.html" title="enum in org.biogroovy.models" target="classFrame">GeneOntologyType</a></li>
<li><a href="org/biogroovy/io/local/GeneReader.html" title="class in org.biogroovy.io.local" target="classFrame">GeneReader</a></li>
<li><a href="org/biogroovy/io/local/GeneWriter.html" title="class in org.biogroovy.io.local" target="classFrame">GeneWriter</a></li>
<li><a href="org/biogroovy/models/cluster/Go2SIFClusterWriter.html" title="class in org.biogroovy.models.cluster" target="classFrame">Go2SIFClusterWriter</a></li>
<li><a href="org/biogroovy/models/cluster/GoComponentClusterMaker.html" title="class in org.biogroovy.models.cluster" target="classFrame">GoComponentClusterMaker</a></li>
<li><a href="org/biogroovy/models/cluster/GoFunctionClusterMaker.html" title="class in org.biogroovy.models.cluster" target="classFrame">GoFunctionClusterMaker</a></li>
<li><a href="org/biogroovy/models/cluster/GoProcessClusterMaker.html" title="class in org.biogroovy.models.cluster" target="classFrame">GoProcessClusterMaker</a></li>
<li><a href="org/biogroovy/io/HTMLMetadataSlurper.html" title="class in org.biogroovy.io" target="classFrame">HTMLMetadataSlurper</a></li>
<li><a href="org/biogroovy/models/cluster/IClusterMaker.html" title="interface in org.biogroovy.models.cluster" target="classFrame"><I>IClusterMaker</I></a></li>
<li><a href="org/biogroovy/models/cluster/IClusterWriter.html" title="interface in org.biogroovy.models.cluster" target="classFrame"><I>IClusterWriter</I></a></li>
<li><a href="org/biogroovy/io/IFetcher.html" title="interface in org.biogroovy.io" target="classFrame"><I>IFetcher</I></a></li>
<li><a href="org/biogroovy/models/IModel.html" title="interface in org.biogroovy.models" target="classFrame"><I>IModel</I></a></li>
<li><a href="org/biogroovy/io/IReader.html" title="interface in org.biogroovy.io" target="classFrame"><I>IReader</I></a></li>
<li><a href="org/biogroovy/search/IResultBuilder.html" title="interface in org.biogroovy.search" target="classFrame"><I>IResultBuilder</I></a></li>
<li><a href="org/biogroovy/search/ISearchEngine.html" title="interface in org.biogroovy.search" target="classFrame"><I>ISearchEngine</I></a></li>
<li><a href="org/biogroovy/search/ISearchParamMapBuilder.html" title="interface in org.biogroovy.search" target="classFrame"><I>ISearchParamMapBuilder</I></a></li>
<li><a href="org/biogroovy/search/ISearchParamValidator.html" title="interface in org.biogroovy.search" target="classFrame"><I>ISearchParamValidator</I></a></li>
<li><a href="org/biogroovy/io/ISeqWriter.html" title="interface in org.biogroovy.io" target="classFrame"><I>ISeqWriter</I></a></li>
<li><a href="org/biogroovy/io/ISeqWriter.NamingStrategy.html" title="enum in org.biogroovy.io.ISeqWriter" target="classFrame">ISeqWriter.NamingStrategy</a></li>
<li><a href="org/biogroovy/models/ISequence.html" title="interface in org.biogroovy.models" target="classFrame"><I>ISequence</I></a></li>
<li><a href="org/biogroovy/models/decorators/ISequenceDecorator.html" title="interface in org.biogroovy.models.decorators" target="classFrame"><I>ISequenceDecorator</I></a></li>
<li><a href="org/biogroovy/io/ISerializer.html" title="interface in org.biogroovy.io" target="classFrame"><I>ISerializer</I></a></li>
<li><a href="org/biogroovy/io/ISlurper.html" title="interface in org.biogroovy.io" target="classFrame"><I>ISlurper</I></a></li>
<li><a href="org/biogroovy/io/IWriter.html" title="interface in org.biogroovy.io" target="classFrame"><I>IWriter</I></a></li>
<li><a href="org/biogroovy/models/Journal.html" title="class in org.biogroovy.models" target="classFrame">Journal</a></li>
<li><a href="org/biogroovy/models/cluster/JournalClusterMaker.html" title="class in org.biogroovy.models.cluster" target="classFrame">JournalClusterMaker</a></li>
<li><a href="org/biogroovy/io/local/JournalReader.html" title="class in org.biogroovy.io.local" target="classFrame">JournalReader</a></li>
<li><a href="org/biogroovy/models/JournalRights.html" title="enum in org.biogroovy.models" target="classFrame">JournalRights</a></li>
<li><a href="org/biogroovy/io/journaltocs/JournalTOCSArticleReader.html" title="class in org.biogroovy.io.journaltocs" target="classFrame">JournalTOCSArticleReader</a></li>
<li><a href="org/biogroovy/io/journaltocs/JournalTOCSJournalReader.html" title="class in org.biogroovy.io.journaltocs" target="classFrame">JournalTOCSJournalReader</a></li>
<li><a href="org/biogroovy/io/local/JournalWriter.html" title="class in org.biogroovy.io.local" target="classFrame">JournalWriter</a></li>
<li><a href="org/biogroovy/models/cluster/Keyword2SIFClusterWriter.html" title="class in org.biogroovy.models.cluster" target="classFrame">Keyword2SIFClusterWriter</a></li>
<li><a href="org/biogroovy/models/cluster/KeywordArticleClusterMaker.html" title="class in org.biogroovy.models.cluster" target="classFrame">KeywordArticleClusterMaker</a></li>
<li><a href="org/biogroovy/models/cluster/Mesh2SIFClusterWriter.html" title="class in org.biogroovy.models.cluster" target="classFrame">Mesh2SIFClusterWriter</a></li>
<li><a href="org/biogroovy/models/cluster/MeshClusterMaker.html" title="class in org.biogroovy.models.cluster" target="classFrame">MeshClusterMaker</a></li>
<li><a href="org/biogroovy/models/MeshHeading.html" title="class in org.biogroovy.models" target="classFrame">MeshHeading</a></li>
<li><a href="org/biogroovy/io/sulab/MyGeneInfoFetcher.html" title="class in org.biogroovy.io.sulab" target="classFrame">MyGeneInfoFetcher</a></li>
<li><a href="org/biogroovy/io/sulab/MyProteinInfoFetcher.html" title="class in org.biogroovy.io.sulab" target="classFrame">MyProteinInfoFetcher</a></li>
<li><a href="org/biogroovy/io/NodeType.html" title="enum in org.biogroovy.io" target="classFrame">NodeType</a></li>
<li><a href="org/biogroovy/search/validators/NotNullValidator.html" title="class in org.biogroovy.search.validators" target="classFrame">NotNullValidator</a></li>
<li><a href="org/biogroovy/mindmaps/OMIM2mindmap.html" title="class in org.biogroovy.mindmaps" target="classFrame">OMIM2mindmap</a></li>
<li><a href="org/biogroovy/models/Omim.html" title="class in org.biogroovy.models" target="classFrame">Omim</a></li>
<li><a href="org/biogroovy/io/eutils/OmimReader.html" title="class in org.biogroovy.io.eutils" target="classFrame">OmimReader</a></li>
<li><a href="org/biogroovy/models/OmimText.html" title="class in org.biogroovy.models" target="classFrame">OmimText</a></li>
<li><a href="org/biogroovy/eutils/OmimTransforms.html" title="class in org.biogroovy.eutils" target="classFrame">OmimTransforms</a></li>
<li><a href="org/biogroovy/io/local/PDFArticleSerializer.html" title="class in org.biogroovy.io.local" target="classFrame">PDFArticleSerializer</a></li>
<li><a href="org/biogroovy/models/Pathway.html" title="class in org.biogroovy.models" target="classFrame">Pathway</a></li>
<li><a href="org/biogroovy/models/cluster/PathwayClusterMaker.html" title="class in org.biogroovy.models.cluster" target="classFrame">PathwayClusterMaker</a></li>
<li><a href="org/biogroovy/cabio/PathwayReader.html" title="class in org.biogroovy.cabio" target="classFrame">PathwayReader</a></li>
<li><a href="org/biogroovy/models/Phenotype.html" title="class in org.biogroovy.models" target="classFrame">Phenotype</a></li>
<li><a href="org/biogroovy/models/Protein.html" title="class in org.biogroovy.models" target="classFrame">Protein</a></li>
<li><a href="org/biogroovy/models/ProteinDomain.html" title="class in org.biogroovy.models" target="classFrame">ProteinDomain</a></li>
<li><a href="org/biogroovy/models/ProteinStructureEntry.html" title="class in org.biogroovy.models" target="classFrame">ProteinStructureEntry</a></li>
<li><a href="org/biogroovy/models/ProteinStructureEntry.ExperimentalMethod.html" title="enum in org.biogroovy.models.ProteinStructureEntry" target="classFrame">ProteinStructureEntry.ExperimentalMethod</a></li>
<li><a href="org/biogroovy/models/ProteinStructureEntry.StructureType.html" title="enum in org.biogroovy.models.ProteinStructureEntry" target="classFrame">ProteinStructureEntry.StructureType</a></li>
<li><a href="org/biogroovy/io/eutils/PubChemJsonReader.html" title="class in org.biogroovy.io.eutils" target="classFrame">PubChemJsonReader</a></li>
<li><a href="org/biogroovy/io/eutils/PubMedArticleReader.html" title="class in org.biogroovy.io.eutils" target="classFrame">PubMedArticleReader</a></li>
<li><a href="org/biogroovy/search/eutils/PubMedSearchEngine.html" title="class in org.biogroovy.search.eutils" target="classFrame">PubMedSearchEngine</a></li>
<li><a href="org/biogroovy/search/eutils/PubMedSearchEngine.PubMedSearchResultBuilder.html" title="class in org.biogroovy.search.eutils.PubMedSearchEngine" target="classFrame">PubMedSearchEngine.PubMedSearchResultBuilder</a></li>
<li><a href="org/biogroovy/io/eutils/PubMedSlurper.html" title="class in org.biogroovy.io.eutils" target="classFrame">PubMedSlurper</a></li>
<li><a href="org/biogroovy/models/RSSFeed.html" title="class in org.biogroovy.models" target="classFrame">RSSFeed</a></li>
<li><a href="org/biogroovy/io/local/RSSReader.html" title="class in org.biogroovy.io.local" target="classFrame">RSSReader</a></li>
<li><a href="org/biogroovy/io/local/RSSWriter.html" title="class in org.biogroovy.io.local" target="classFrame">RSSWriter</a></li>
<li><a href="org/biogroovy/search/Search.html" title="class in org.biogroovy.search" target="classFrame">Search</a></li>
<li><a href="org/biogroovy/search/SearchEngineFactory.html" title="class in org.biogroovy.search" target="classFrame">SearchEngineFactory</a></li>
<li><a href="org/biogroovy/search/SearchException.html" title="class in org.biogroovy.search" target="classFrame">SearchException</a></li>
<li><a href="org/biogroovy/search/SearchParam.html" title="class in org.biogroovy.search" target="classFrame">SearchParam</a></li>
<li><a href="org/biogroovy/search/SearchParamSet.html" title="class in org.biogroovy.search" target="classFrame">SearchParamSet</a></li>
<li><a href="org/biogroovy/search/SearchParamType.html" title="enum in org.biogroovy.search" target="classFrame">SearchParamType</a></li>
<li><a href="org/biogroovy/io/local/SearchReader.html" title="class in org.biogroovy.io.local" target="classFrame">SearchReader</a></li>
<li><a href="org/biogroovy/search/SearchResult.html" title="class in org.biogroovy.search" target="classFrame">SearchResult</a></li>
<li><a href="org/biogroovy/search/SearchSerializer.html" title="class in org.biogroovy.search" target="classFrame">SearchSerializer</a></li>
<li><a href="org/biogroovy/io/local/SearchWriter.html" title="class in org.biogroovy.io.local" target="classFrame">SearchWriter</a></li>
<li><a href="org/biogroovy/models/Sequence.html" title="interface in org.biogroovy.models" target="classFrame"><I>Sequence</I></a></li>
<li><a href="org/biogroovy/models/SequenceFeaturePoint.html" title="class in org.biogroovy.models" target="classFrame">SequenceFeaturePoint</a></li>
<li><a href="org/biogroovy/models/SequenceFeatureRange.html" title="class in org.biogroovy.models" target="classFrame">SequenceFeatureRange</a></li>
<li><a href="org/biogroovy/io/Serializer.html" title="class in org.biogroovy.io" target="classFrame">Serializer</a></li>
<li><a href="org/biogroovy/io/SerializerFactory.html" title="class in org.biogroovy.io" target="classFrame">SerializerFactory</a></li>
<li><a href="org/biogroovy/search/SnowflakeSearchEngine.html" title="interface in org.biogroovy.search" target="classFrame"><I>SnowflakeSearchEngine</I></a></li>
<li><a href="org/biogroovy/io/StreamFactory.html" title="class in org.biogroovy.io" target="classFrame">StreamFactory</a></li>
<li><a href="org/biogroovy/eutils/StreamFactory.html" title="class in org.biogroovy.eutils" target="classFrame">StreamFactory</a></li>
<li><a href="org/biogroovy/models/Transcript.html" title="class in org.biogroovy.models" target="classFrame">Transcript</a></li>
<li><a href="org/biogroovy/net/URLFactory.html" title="class in org.biogroovy.net" target="classFrame">URLFactory</a></li>
<li><a href="org/biogroovy/net/URLMap.html" title="class in org.biogroovy.net" target="classFrame">URLMap</a></li>
<li><a href="org/biogroovy/net/URLTemplate.html" title="class in org.biogroovy.net" target="classFrame">URLTemplate</a></li>
<li><a href="org/biogroovy/models/decorators/UniProtDecorator.html" title="class in org.biogroovy.models.decorators" target="classFrame">UniProtDecorator</a></li>
<li><a href="org/biogroovy/models/decorators/UniProtDecorator.DecoratorTask.html" title="class in org.biogroovy.models.decorators.UniProtDecorator" target="classFrame">UniProtDecorator.DecoratorTask</a></li>
<li><a href="org/biogroovy/io/uniprot/UniProtReader.html" title="class in org.biogroovy.io.uniprot" target="classFrame">UniProtReader</a></li>
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